PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48881.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 254aa    MW: 28472.4 Da    PI: 6.7442
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48881.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.84.5e-55671711102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d+fdflvdi+
  KHN48881.1  67 QLQMFWSNQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDII 165
                 89******988889************************************************************************************* PP

       NF-YC  97 prdelk 102
                 prdelk
  KHN48881.1 166 PRDELK 171
                 ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-3446161IPR009072Histone-fold
PfamPF008082.1E-2189152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.8E-3790167IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGVATGASQM AYSSHYPTAP MVASGTPAVA VPSPTQAPAA FSSSAHQLAY QQAQHFHHQQ  60
QQHQQQQLQM FWSNQMQEIE QTIDFKNHSL PLARIKKIMK ADEDVRMISA EAPVIFAKAC  120
EMFILELTLR SWIHTEENKR RTLQKNDIAA AISRNDVFDF LVDIIPRDEL KEEGLGITKA  180
TIPLVNSPAD MPYYYVPPQH PVVGPPGMIM GKPVGAEQAT LYSTQQPRPP MAFMPWPHTQ  240
PQQQQPPQHQ QTDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-416816719119HapE
4g92_C1e-416816719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992820.0BT099282.1 Soybean clone JCVI-FLGm-23D16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597045.10.0PREDICTED: uncharacterized protein LOC100799981 isoform X3
RefseqXP_014622845.10.0PREDICTED: uncharacterized protein LOC100799981 isoform X2
SwissprotQ8LCG75e-80NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0B2SQE00.0A0A0B2SQE0_GLYSO; Nuclear transcription factor Y subunit C-2
TrEMBLC6TNG00.0C6TNG0_SOYBN; Uncharacterized protein
TrEMBLK7ME090.0K7ME09_SOYBN; Uncharacterized protein
STRINGGLYMA15G41486.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-77nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]