PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 699aa    MW: 77572.3 Da    PI: 7.8349
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48291.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23117218199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l
  KHN48291.1 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDL 211
                 89****************************997656666..69999********************************************..4488999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  KHN48291.1 212 CVGIRRA 218
                 ****997 PP

2Auxin_resp110.31.9e-36286369183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a++k++FevvY+Prast+eF+vk++ ve+a+++++  G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
  KHN48291.1 286 AANLAANKKPFEVVYYPRASTPEFCVKASLVEAAMQTRWYSGIRFKMAFETEDSSRISWfMGTISSVQVADPLNWPNSPWRLLQ 369
                 7899******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-29109218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-36110220IPR015300DNA-binding pseudobarrel domain
CDDcd100175.64E-21116217No hitNo description
PROSITE profilePS5086313.014117219IPR003340B3 DNA binding domain
SMARTSM010196.0E-21117219IPR003340B3 DNA binding domain
PfamPF023622.1E-21117218IPR003340B3 DNA binding domain
PfamPF065075.5E-32286369IPR010525Auxin response factor
PROSITE profilePS5174518.079613693IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MITFMDTKEK LKEVERCLDP QLWHACAGGM VQMPTVNTKV YYFPQGHAEH ACGPVNFKTC  60
PKVPPFVPCR VVAVKYMADP ETDEVYAKLK LVPLNANDVD YDHDVIGAET RDKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGLETSS GWNPAGGNFP  240
MPYSGFSPFL REDDNRILRN GNSNGLNPSV SMMGKGKVRP EAIIEAANLA ANKKPFEVVY  300
YPRASTPEFC VKASLVEAAM QTRWYSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW  360
PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHF SPFSPPRKKL RLPQHPDFPL  420
DGQIPLPTLP NNLLGPNNTN QFGCLLESTP AGMQGARHAH YGLSLSDLHL SKLQSGLSSA  480
GFPPLDHAAT PMKVSNNKTL QKPSISENVS CLLSMTNSTR SSKKLDAGKT PSLMLFGQKI  540
LTEQQISPSS SVDTLSPVLT RNCSTDGNVN KVTNFFDGFG SALHQQGLHE HSSCERFQWC  600
KDNHQEIEAN METGHCKVFM ESEDVGRTMD LSLLRSYDEL HRKLADMFGI EKSEMLSRVL  660
YCDSVGAIKH IGDEPFSDFT RTAKRLTILM DSGSNNVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-771839051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48291.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198002.10.0auxin response factor 18-like
RefseqXP_028198003.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A445HFS90.0A0A445HFS9_GLYSO; Auxin response factor
STRINGGLYMA10G06080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]