PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN48238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 288aa    MW: 31801.4 Da    PI: 8.4862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN48238.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014111133123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C++ F++   L  H  +H
  KHN48238.1 111 YQCKTCNRYFPSFQALGGHRASH 133
                 9***********99999998887 PP

2zf-C2H213.80.00017192214123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  Fs+   L  H+r+H
  KHN48238.1 192 HECSICGAEFSSGQALGGHMRRH 214
                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.06E-9110133No hitNo description
PROSITE profilePS5015710.18111138IPR007087Zinc finger, C2H2
SMARTSM003550.12111133IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-11111135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.06E-9187214No hitNo description
Gene3DG3DSA:3.30.160.606.7E-4188214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.4E-13191215IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743192214IPR007087Zinc finger, C2H2
SMARTSM003550.01192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQVQEELLVA SKDHTHQMMM IKGKRTKRQR APSPLSLAMP YNNSTSSSTN NSIDSATTSP  60
SPTNTIELRE DEDMANCLIL LAQGRHHVAA PTSYHNNDNN DNHKSTSLYL YQCKTCNRYF  120
PSFQALGGHR ASHKKPKQNG TFSSEAVTTF VEENNDRYDP TTSTTLSLKI PNGVNNNMCS  180
TTTTTTTKAK VHECSICGAE FSSGQALGGH MRRHRTLVNA SLATSMSGGN VGVGGSNEFQ  240
EAKKPLKLDL NLPALPEDDH RESKFSFQQR EKNVIVFSKQ SSLVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN48238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028196964.10.0zinc finger protein ZAT5-like
TrEMBLA0A445HFV80.0A0A445HFV8_GLYSO; Zinc finger protein ZAT5
STRINGGLYMA13G20950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-52C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]