PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN47662.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 256aa    MW: 27831.7 Da    PI: 8.2842
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN47662.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26045.22.7e-14463155
      DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55
                +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+
  KHN47662.1  4 SCNGCRVLRKGCSEDCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPENLRP 63
                6*****************************************************999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.563120IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-10463IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEN  60
LRPAGSYVKI VLKGEPITPI TSEAAANGRA PPLKAYDIRH VSKDQNSANE TPKTKTRSRF  120
KRTSGTLIKP KASKGTGFVP VEPEMANRTA SHESGLSHLS EATAMVEGES KESESVVSMD  180
TSNLIHEEPE WVAKTSDGTG ESGNEIGLEL TLGFEPVSRL HHVVPMKKRK IIELKSCGDS  240
AEKDSCKMEL GLEYPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN47662.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541285.11e-179LOB domain-containing protein 41
RefseqXP_028195881.11e-179LOB domain-containing protein 41-like
SwissprotQ9M8861e-74LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0B2STU10.0A0A0B2STU1_GLYSO; LOB domain-containing protein 41
STRINGGLYMA13G07590.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-70LOB domain-containing protein 41
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]