PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46047.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 909aa    MW: 100689 Da    PI: 6.5953
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46047.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.3e-24127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  KHN46047.1 127 FCKILTASDTSTHGGFSVPRRAAEKVfppldfSQQPPCQ-ELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLL 222
                 99*****************************86666675.9************************************************..8899999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  KHN46047.1 223 LGIRRA 228
                 ***997 PP

2Auxin_resp119.62.4e-39253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  KHN46047.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPFAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 336
                 79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100178.47E-23126227No hitNo description
SMARTSM010193.0E-25127229IPR003340B3 DNA binding domain
PfamPF023623.2E-23127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028127229IPR003340B3 DNA binding domain
PfamPF065071.5E-34253336IPR010525Auxin response factor
PfamPF023091.1E-6772861IPR033389AUX/IAA domain
SuperFamilySSF542771.57E-6772852No hitNo description
PROSITE profilePS5174523.864776860IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MKLSSSGFSS PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE  60
VDGHIPNYPS LPPQLICQLH NLTMHADTET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS  120
KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPF AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHAGLKD DDFGTNSSLM WLRDTDRGLP SLNFQGIGVS  420
PWLQPRLDPS MVNYQSDMYQ AMAAAALQDM WTSDPSKQHP TSAIQFQQQQ NFPNRTSALM  480
QTQMLQQSQP QQAFPNSQEN SHPSPSPSQS QAQTQTHFQQ HLQHQHSFNT QNQHNLLQQQ  540
QQSQLQQQQV VDHQQISSAV STMSQFVSAP QSQSPPMQAI SSLGHQQSFS DSNGNPVTTA  600
VVSPLHSILG SFPQDDTSHL LNLPRSTSWV PVQHSTAWPS SKRVAVDPLF SSGASQCVLP  660
QVEQLGQPQS TMAQNGIALP PFPGRECTIE GSNDPQNHLL FGVNIEPSSL LMHNGMSSLK  720
GVSSNSDSPT IPFQSSNYLN TTVPDSSLNP GMTHNIGESG FLQTPENGGQ GNPTNKTFVK  780
VYKSGSFGRS LDITKFTSYP ELRSELARMF GLEGELEDPV RSGWQLVFVD QENDVLLLGD  840
GPWPEFVNSV GCIKILSPQE VQQMGNNGLE LLNSVPIQRL SNGVCDDYAG REDPRNLSTG  900
ITIVGSLNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232637.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0B2SP600.0A0A0B2SP60_GLYSO; Auxin response factor
STRINGGLYMA08G10550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]