PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45191.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 241aa    MW: 27071.8 Da    PI: 8.3611
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45191.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.96.9e-3816104188
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                 +C aCk+lrr+Ca+dC++apyf++eq p++fa++hk+FGasn++kll ++p+++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq e
  KHN45191.1  16 PCGACKFLRRRCATDCIFAPYFCSEQgPARFAAIHKVFGASNISKLLLHIPTHDRCEAVVTITYEAQARIRDPVYGCVSHIFALQQQEE 104
                 7*************************99*********************************************************9965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.55415117IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-3616104IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:2.90.10.102.4E-5108216IPR001480Bulb-type lectin domain
SuperFamilySSF511103.8E-5110147IPR001480Bulb-type lectin domain
PfamPF009544.8E-5178232IPR000858S-locus glycoprotein domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048544Biological Processrecognition of pollen
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MASASGNGVS NGSGSPCGAC KFLRRRCATD CIFAPYFCSE QGPARFAAIH KVFGASNISK  60
LLLHIPTHDR CEAVVTITYE AQARIRDPVY GCVSHIFALQ QQEELQFKLL SLGNFMLQMQ  120
DDGNLVLKAC QWSDPAYWYT STTTRNVNLE FNATSALLHL VSGSKNTYPL TKNTSTPMED  180
YYHRTTIYGK GNFHQYAYHR KNGTGWRRVW KAVEDPCRLN LVCGVYGLCT CKICENEPTF  240
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3410102596LOB family transfactor Ramosa2.1
5ly0_B1e-3410102596LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358571e-105AC235857.2 Glycine max clone GM_WBb0095A20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553141.11e-164LOB domain-containing protein 29-like
TrEMBLA0A0B2SEK30.0A0A0B2SEK3_GLYSO; LOB domain-containing protein 16
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.14e-51lateral organ boundaries-domain 16
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]