PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44987.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 211aa    MW: 23679.5 Da    PI: 6.7097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44987.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000223557123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C+ C++ F++   L  H+++H
  KHN44987.1 35 YACSFCKREFRSAQALGGHMNVH 57
                89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-63261No hitNo description
Gene3DG3DSA:3.30.160.608.2E-43360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-63558IPR007087Zinc finger, C2H2
SMARTSM003550.00923557IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1983562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEGNYLNRNS TTPQREDSFG FEEHSWGTPW PARNYACSFC KREFRSAQAL GGHMNVHRRD  60
RARLRSSLSS WVSECPKPNP NNNPTLLPPP SSSSPSPLPD EPLNYAHPSP LCSPCLTLSS  120
SPSPASTSGD KKPRLTPSHQ FPLLIPQSEI KMMSMNTRSD FIADEEMKGC VVEEEEHKGF  180
KNNEQNITLE LGIGLLKHQE EKLDLELRLG H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113057229superman protein
2l1o_A2e-113057229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-179AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195896.11e-155transcriptional regulator SUPERMAN-like
TrEMBLA0A445HEY41e-153A0A445HEY4_GLYSO; Transcriptional regulator SUPERMAN
STRINGGLYMA13G18150.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.16e-14zinc finger protein 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]