PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44333.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 318aa    MW: 35574.9 Da    PI: 8.3504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44333.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20137187256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  KHN44333.1 137 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDNAAFKLRGE 187
                 59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.81E-36136196No hitNo description
SMARTSM003802.1E-40137200IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-23137195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-33137195IPR001471AP2/ERF domain
PROSITE profilePS5103223.617137194IPR001471AP2/ERF domain
PRINTSPR003673.8E-11138149IPR001471AP2/ERF domain
PfamPF008473.3E-14138187IPR001471AP2/ERF domain
PRINTSPR003673.8E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTTFMDMYNT TSSIMTPDFL DQCSDQELMK ALEPFMKSDS SSTTSSSITT YPSFSSFSSS  60
PNLSSTTWST QFCSSSYHQK GPTPTQASSF KLNQLTPSQI FQIQTQIQVP RAQFLSPKPI  120
TMKHVRASCS NSKATKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFETA EEAALAYDNA  180
AFKLRGENAR LNFPHLRHHG ARVYGEFGNY KPLPSAVDAK LQAICQSLGT KLQKLKTDQN  240
PVVDAKVKKT SKFEDFKIEN RTSSSSALSD EYSSSSSSPE SDITFLDFSD SCETTCNLGL  300
DLEKYPSVEI DWAALSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23136194160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933060.0BT093306.1 Soybean clone JCVI-FLGm-24E1 unknown mRNA.
GenBankJQ9241910.0JQ924191.1 Glycine max clone Gm11lower_Williams_82 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195533.10.0ethylene-responsive transcription factor ERF060-like
SwissprotQ8H1E42e-72RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A445HI320.0A0A445HI32_GLYSO; Ethylene-responsive transcription factor RAP2-4
STRINGGLYMA18G02170.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-56related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]