PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43273.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 258aa    MW: 28739.5 Da    PI: 6.5835
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43273.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.37e-56771801101
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv
  KHN43273.1  77 QLQQFWSNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 175
                 89******99999************************************************************************************** PP

       NF-YC  97 prdel 101
                 pr++l
  KHN43273.1 176 PREDL 180
                 **987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-3371171IPR009072Histone-fold
PfamPF008081.6E-2199162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37100177IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDHQGHSQNP SMGVVGSGAQ LAYGSNPYQP GQITGPPGSV VTSVGTIQST PAGAQLGQHQ  60
LAYQHIHQQQ QHQLQQQLQQ FWSNQYQEIE KVTDFKNHSL PLARIKKIMK ADEDVRMISA  120
EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL  180
KDEVLASIPR GTMPVAGPAD ALPYCYMPPQ HASQVGAAGV IMGKPVMDPN MYAQQSHPYM  240
APQMWPQPPD QRQSSPEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B6e-4192177994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C6e-4192177994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0926780.0BT092678.1 Soybean clone JCVI-FLGm-16A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627411.10.0PREDICTED: nuclear transcription factor Y subunit C-3
RefseqXP_006604828.10.0PREDICTED: nuclear transcription factor Y subunit C-3
SwissprotQ8L4B29e-87NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLI1NC070.0I1NC07_SOYBN; Uncharacterized protein
STRINGGLYMA19G42460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-83nuclear factor Y, subunit C9