PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40565.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 109aa    MW: 11495.2 Da    PI: 8.6162
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40565.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.91.3e-3619106187
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r d++ +++yeA+ r+rdPvyG+v++i++lqqq+
  KHN40565.1  19 PCGACKFLRRKCVSGCIFAPYFDSEQgTSHFAAVHKVFGASNVSKLLLSIPVHRRLDTVITICYEAQSRIRDPVYGCVAHIFALQQQV 106
                 7***********************9989**********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.15718109IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3619106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MSSGNGGGGG GSSSGTGSPC GACKFLRRKC VSGCIFAPYF DSEQGTSHFA AVHKVFGASN  60
VSKLLLSIPV HRRLDTVITI CYEAQSRIRD PVYGCVAHIF ALQQQVIID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139994.14e-61hypothetical protein PHAVU_008G075900g
SwissprotQ9SLB76e-54LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0B2S5P72e-75A0A0B2S5P7_GLYSO; LOB domain-containing protein 16
STRINGGLYMA18G45320.13e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-53LOB domain-containing protein 18
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]