PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40318.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1110aa    MW: 122978 Da    PI: 6.7683
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40318.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.1e-22129230199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ a+++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  KHN40318.1 129 FCKQLTASDTSTHGGFSVPRRAADKIfppldySMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEKQHLL 224
                 99*****************************9545444.38************************************************..5689999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  KHN40318.1 225 LGIRRA 230
                 ***997 PP

2Auxin_resp119.72.4e-39255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPr+s+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  KHN40318.1 255 AAHAAANNSPFTVFYNPRTSPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 338
                 79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-42118258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-40120244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-18128229No hitNo description
PROSITE profilePS5086311.688129231IPR003340B3 DNA binding domain
SMARTSM010191.9E-21129231IPR003340B3 DNA binding domain
PfamPF023623.3E-20129230IPR003340B3 DNA binding domain
PfamPF065072.8E-34255338IPR010525Auxin response factor
PfamPF023095.0E-79971083IPR033389AUX/IAA domain
PROSITE profilePS5174526.7389981082IPR000270PB1 domain
SuperFamilySSF542776.96E-610111076No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1110 aa     Download sequence    Send to blast
MKTTQQPEAP QGDPCEEKKK SINPELWQAC AGPLVNLPPS GTHVIYFPQG HSEQVAASLN  60
KDPHSQIPNY PNLPSKLLCL LHNLTLLADP ETDEVYAQIT LQPVPSFDKD ALLRSDLALK  120
SSKPQPDFFC KQLTASDTST HGGFSVPRRA ADKIFPPLDY SMQPPAQELV ARDLHDTVWT  180
FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG DSVLFIRDEK QHLLLGIRRA NRQPTNISSS  240
VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRTSPSEFVI PLAKYYKSVY SHQPSLGMRF  300
RMMFETEDSG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGEKR SRVSIWEIEP  360
VTAPFFICPP PFFRSKRPRQ PGMPDDELSD FDNIFKRTMP WLGDDMCMKD PQGLPGLSLA  420
QWMNMQQNPA LANSLQPNYA PSLSGSILQN IPGADISRQL GFSAPQISQS DNVALNTQRL  480
LQTAQQLDHL QKLPSTSSTL GTVLLPQQQL GDITQQPRQN LANQTIPQGQ VQSQLLHPQN  540
MVQTNNILQQ QQPSIQNHQL HRSLSQNPSQ QQTTIGQNQP QNLIQSPMPD HVQQLQMSDN  600
QIQLQLLQKL QQQKQTLLAQ QTALQQPTQL TQIQDQQRQL LDKTHNLSRA LTPGQVLEIP  660
HIIQNSLPEA NSISNQMTKA NCQSNIQFSQ QPKLQQQQQP GMVSEMPGHM ALLPTATTNQ  720
LSAGGSSIVT GAGGAGQSVI TDDVPSRSTS PSTNNCTNAL PQLINSRFPR STMVGDDMAH  780
SAATILSSSA LETSSSNANM LKDLQPKFEV KPSLNISKIQ NQGHFAPHTY LNGNAAHTDC  840
LDTSSSTTSV CLSQSDAHMN QNSNPLSYNR QSMLFRDNNQ DGEVQADARS NIPYANNIDS  900
QIGMPLNPDS LLTKGTLRLG KYLSNNFSSE GMLGNYENNR DAQQELSSSM VSQTFGVPDM  960
AFNSIDSTID DSNFLNSGPW APPPAPPPLP PAQFQRMRTY TKVYKRGAVG RSIDITRYSG  1020
YEELKKDLAR RFGIEGQLED RQRIGWKLVY VDHESDVLLV GDDPWEEFVN CVRCIKILSP  1080
QEVQQMSLDG DFGNGGLQNQ ACSSSDGGNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611835947388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40318.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529091.10.0auxin response factor 19
RefseqXP_028240273.10.0auxin response factor 19-like
TrEMBLA0A445JW450.0A0A445JW45_GLYSO; Auxin response factor
TrEMBLI1KJW60.0I1KJW6_SOYBN; Auxin response factor
STRINGGLYMA07G15640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]