PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40139.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 247aa    MW: 25867.4 Da    PI: 7.752
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40139.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.6e-40261261100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC ++C++apyf +e+ + +fa+vhk+FGasn++kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+ael++l+
  KHN40139.1  26 PCGACKFLRRKCMPGCIFAPYFDSEEgATHFAAVHKVFGASNISKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVMSLQAELSYLQ 124
                 7*********************998879********************************************************************998 PP

      DUF260  99 ee 100
                  +
  KHN40139.1 125 GH 126
                 65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.26325127IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-4026124IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSINSSCSIS GGSSSGGNNN SSGGSPCGAC KFLRRKCMPG CIFAPYFDSE EGATHFAAVH  60
KVFGASNISK LLLNIPVHKR LDAVVTICYE AQARLRDPVY GCVAHIFALQ QQVMSLQAEL  120
SYLQGHLATL ELPQPPPPSS PQATTMAPPP LISIAEFIPS SALASSTVPP TYDLSSLFDP  180
MAQTPSWAVQ PRPIESRQYV GSGPSGPSAT IASGGDLQAL ARELLHRHGS APVVACSNPS  240
SSYPISK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354101e-111AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517057.11e-180PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-78LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0B2S7911e-180A0A0B2S791_GLYSO; LOB domain-containing protein 18
TrEMBLI1J7Y21e-180I1J7Y2_SOYBN; Uncharacterized protein
STRINGGLYMA01G34540.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.19e-79LOB domain-containing protein 18
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]