PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39626.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 265aa    MW: 29793.5 Da    PI: 5.0556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39626.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.22.4e-471253123374
        GRAS 123 lQWpaLlqaLasRp.egppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
                 +QWp++l+aL+ Rp ++pp +R+T+v +++s+             +  +rL  fA++++v++++n l    l++l+ ++ +++p+E  +V+ +++lh+l
  KHN39626.1   1 MQWPTFLEALSRRPgGPPPLVRLTVVTASSSTendtpfcIGPPGDNFSSRLLGFAQSMNVNLQINKLDNCPLHTLNAQSVDTSPDEIFVVCAQFRLHQL 99 
                 8*************55566*******99888888888877788999********************9777***************************** PP

        GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadh..n.sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                     ++ ++er+e+Lk++++++Pk v+++++++ +  n  ++F ++f++ +ey + ++ds+++ +    + r + Er++++ e+ ++++++ +     +
  KHN39626.1 100 N---HNAPDERSEFLKVLRNMEPKGVILSDNNMGCccNcCGDFTTGFSRRVEYLWRFLDSTSSAF----KGRESEERRVMEGEAAKALTNQRET----N 187
                 8...66666778********************8775431469*******************6665....5566666666666688888776665....9 PP

        GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 e +ekW er++eaGF    ++e+a +  ++llrk++ +++++ve+++ s+ l Wk++++ ++S W+
  KHN39626.1 188 EGKEKWCERMKEAGFVGEVFGEDAIDGGRALLRKYDgNWEMKVEDDNTSVGLWWKGQSVSFCSLWK 253
                 ************************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.6031232IPR005202Transcription factor GRAS
PfamPF035148.3E-451253IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQWPTFLEAL SRRPGGPPPL VRLTVVTASS STENDTPFCI GPPGDNFSSR LLGFAQSMNV  60
NLQINKLDNC PLHTLNAQSV DTSPDEIFVV CAQFRLHQLN HNAPDERSEF LKVLRNMEPK  120
GVILSDNNMG CCCNCCGDFT TGFSRRVEYL WRFLDSTSSA FKGRESEERR VMEGEAAKAL  180
TNQRETNEGK EKWCERMKEA GFVGEVFGED AIDGGRALLR KYDGNWEMKV EDDNTSVGLW  240
WKGQSVSFCS LWKLDGNYKT STFTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548366.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC81e-157NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A0B2RYT50.0A0A0B2RYT5_GLYSO; Nodulation-signaling pathway 1 protein
TrEMBLI1MK090.0I1MK09_SOYBN; Uncharacterized protein
STRINGGLYMA16G01020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-89GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]