PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37578.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 162aa    MW: 18113.9 Da    PI: 9.5294
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37578.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC126.97.5e-4016117199
       NF-YC   1 qlksfwekqiek...atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql+ fw++q+e+   +t+fk h+lPl+rikki+k+d+dvkmisae+Pv+++kace+fi elt+r+w ++e  k + l + d+ +a+++t  fdfl di+
  KHN37578.1  16 QLNDFWAAQREEakmTTNFKTHSLPLSRIKKIIKTDKDVKMISAETPVVFAKACEMFIKELTIRAWANTEARKGKILSQRDLVSAISQTASFDFLDDIM 114
                 7999*****66522279********************************************************************************** PP

       NF-YC  97 prd 99 
                 p+d
  KHN37578.1 115 PKD 117
                 *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.01E-2216110IPR009072Histone-fold
PfamPF008083.1E-1738101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.0E-3039116IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MIAPTNPPKK KSLEEQLNDF WAAQREEAKM TTNFKTHSLP LSRIKKIIKT DKDVKMISAE  60
TPVVFAKACE MFIKELTIRA WANTEARKGK ILSQRDLVSA ISQTASFDFL DDIMPKDAGL  120
PRTSIASTEN AYLNMPPQQN VAGLPYDAPT MAFPNLNHHA PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-273311636119HapE
4g92_C1e-273311636119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541628.11e-118PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8LCG72e-40NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0B2RYS31e-118A0A0B2RYS3_GLYSO; Nuclear transcription factor Y subunit C-2
TrEMBLI1M1351e-118I1M135_SOYBN; Uncharacterized protein
STRINGGLYMA13G27790.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3614022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.29e-32nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]