PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36953.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 672aa    MW: 74962.5 Da    PI: 6.7305
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36953.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.1e-24106206198
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v
  KHN36953.1 106 FSKVLTASDTSTHGGFSVLRKHATEClpvldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGDNGELRV 202
                 88*****************************77777888*************************************************..3489999** PP

                 EEE- CS
          B3  95 kvfr 98 
                 +v+r
  KHN36953.1 203 GVRR 206
                 **98 PP

2Auxin_resp98.31.1e-32232313183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F++ v+k+++a+++k+svGmRfkm+fe++ds+e  +r+sGt+vgv+d++p +W nSkWrsLk
  KHN36953.1 232 ASHAVATQTLFVVYYKPRT--SQFIIGVNKYLEAMDKKFSVGMRFKMRFEGDDSAEtdKRFSGTIVGVEDISP-HWVNSKWRSLK 313
                 789***************6..9********************************9833577**********99.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-3896235IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-3998221IPR015300DNA-binding pseudobarrel domain
CDDcd100176.64E-21104206No hitNo description
PROSITE profilePS5086312.421106208IPR003340B3 DNA binding domain
SMARTSM010198.0E-22106208IPR003340B3 DNA binding domain
PfamPF023628.1E-22106206IPR003340B3 DNA binding domain
PfamPF065071.5E-30232313IPR010525Auxin response factor
PfamPF023094.2E-7532597IPR033389AUX/IAA domain
PROSITE profilePS5174525.356561642IPR000270PB1 domain
SuperFamilySSF542772.09E-12563637No hitNo description
PfamPF023092.3E-6604645IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
LYEQQWKGCA GPLVDVPRVG QRVFYFPQGH MEQLEASTNQ ELNQRIPLLK LPTKILCRVV  60
NVHLLAEQET DEVYAQITLV PESSQDEPTN ADPCTAEPPR APVHSFSKVL TASDTSTHGG  120
FSVLRKHATE CLPVLDMSQP TPTQELVAKD LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT  180
SKRLVAGDTF VFLRGDNGEL RVGVRRLARQ ASSMPSSVIS SQSMHLGVLA TASHAVATQT  240
LFVVYYKPRT SQFIIGVNKY LEAMDKKFSV GMRFKMRFEG DDSAETDKRF SGTIVGVEDI  300
SPHWVNSKWR SLKVQWDEPA AVPRPDRVSP WEIEPFVASA STPSVQPTMV KTKRPRPPSE  360
TPDVDTTSVA SVFWDAGLQQ ADMAQKNVLA ESKWNDNTGT WHHMQTDMNS KSNSGNTMLR  420
NQTEGSWLSS PHSSCPSHLF QDVTDDSKIV SAWPVSKPHS SKLNNDHVLD QVDKESKVET  480
ATSYRLFGID LIDPSRNSPS VEKASAQAVN VPKVTTEGCT STLSRTDAGH KSDVSMASSM  540
ERKQEQLQVS PKDTQSKQIC RSRTKVQMQG VAVGRAVDLT MLDGYGQLIN ELEDMFNIKG  600
QLQHRNKWEI VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC SSQDVKKMSC GSKLPISSVE  660
DGTVISSDTT ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165133619355Auxin response factor 1
4ldw_A1e-165133619355Auxin response factor 1
4ldw_B1e-165133619355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352356KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573317.10.0auxin response factor 9
RefseqXP_028235350.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0B2RWW40.0A0A0B2RWW4_GLYSO; Auxin response factor (Fragment)
STRINGGLYMA01G25270.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]