PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36892.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 255aa    MW: 28386.9 Da    PI: 9.1959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36892.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-056587123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C k F++   L  H+++H
  KHN36892.1 65 YTCSFCRKEFRSAQALGGHMNVH 87
                9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-66292No hitNo description
Gene3DG3DSA:3.30.160.603.2E-46389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00356587IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-66588IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4066592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKRNSLIMKD YTHHHSCVNN KNPTTTKEFS HVVANCYNNN NIHSNNNIAD QNDYVNGFPW  60
PPRSYTCSFC RKEFRSAQAL GGHMNVHRRD RARLRQSSPP THHEVHQGQA QGPMLNLNLN  120
PNSNSSLSLL PPPPSSSATT TTTLKPVFTC TLPLFVSPTP PSPSSELKRW VVVDGIALNP  180
LSKKTSTPEH YSKSKIPESL SSAGVGEYHH DQAFAREDGC KVLKKGGDIL RMDLEIGLPR  240
GYDLDLELRL GTTYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-136087229superman protein
2l1o_A5e-136087229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36892.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362211e-66AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541817.10.0transcriptional regulator SUPERMAN
RefseqXP_028187223.10.0transcriptional regulator SUPERMAN-like
TrEMBLA0A445IAS90.0A0A445IAS9_GLYSO; Transcriptional regulator SUPERMAN
STRINGGLYMA13G34450.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-29C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]