PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36757.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 123aa    MW: 13269.4 Da    PI: 7.4433
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36757.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC107.39.2e-342210419100
       NF-YC  19 helPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                 h+lPlarikki+k   edvkmis eaP+++skacelfi elt rsw+ a + krrtl+k d+a+av  tdifdfl+  v  +e
  KHN36757.1  22 HSLPLARIKKIMKNsGEDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSSSE 104
                 99***********6269***********************************************************9987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-271796IPR009072Histone-fold
PfamPF008086.6E-212387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.0E-3124100IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MRQAGAYSGL LCGGVSGRTG PHSLPLARIK KIMKNSGEDV KMISGEAPII FSKACELFIE  60
ELTRRSWIMA IQGKRRTLHK EDLASAVIAT DIFDFLITLV SSSESHAVGG ATNVMEVETI  120
DCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C5e-282210040117HapE
4g92_C5e-282210040117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-134AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541864.11e-86PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9SMP04e-33NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
SwissprotQ9FMV57e-33NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0B2RY751e-86A0A0B2RY75_GLYSO; Nuclear transcription factor Y subunit C-1
TrEMBLI1M3F61e-86I1M3F6_SOYBN; Uncharacterized protein
STRINGGLYMA13G35980.14e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.13e-34nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]