PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36573.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 198aa    MW: 20900.2 Da    PI: 8.2085
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36573.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-1863113155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  +g+WvAeIr+p  ng   r +lg+f ta +Aa a+++a+++++g
  KHN36573.1  63 CNYRGVRQRT-WGKWVAEIREP--NG-GNRLWLGTFPTAIGAALACDEAARAMYG 113
                 56*****999.**********9..33.49***********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1263113IPR001471AP2/ERF domain
CDDcd000182.27E-2963122No hitNo description
PROSITE profilePS5103220.12664121IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1964121IPR016177DNA-binding domain
SMARTSM003806.0E-3564127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2964122IPR001471AP2/ERF domain
PRINTSPR003674.2E-96576IPR001471AP2/ERF domain
PRINTSPR003674.2E-987103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MLAKAHNKGD GSKSLAKILA KWKEYNAQID SSSDADKPIR KVPAKGSKKG CMKGKGGPEN  60
SRCNYRGVRQ RTWGKWVAEI REPNGGNRLW LGTFPTAIGA ALACDEAARA MYGSCARLNF  120
PNVSVSSFSE ESSKDSPSAN HCGSSMAVSA NESMISPSNS GVDAEEDVDM EPISLSLSVK  180
HENGEGESGI SSSPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1764121563ATERF1
3gcc_A6e-1764121563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36573.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0893890.0BT089389.1 Soybean clone JCVI-FLGm-1H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235466.11e-140dehydration-responsive element-binding protein
RefseqXP_028186923.11e-140putative dehydration-responsive element-binding protein 2H
SwissprotQ8LFR22e-49DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A445ICM81e-139A0A445ICM8_GLYSO; Dehydration-responsive element-binding protein 2A isoform A
TrEMBLC6SW461e-139C6SW46_SOYBN; Uncharacterized protein
STRINGGLYMA13G38030.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.24e-38DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]