PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34059.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 143aa    MW: 16340.6 Da    PI: 8.3178
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34059.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.68.8e-3841041101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk +rrkC++dC++ pyfpa++p++fa+vh+++G snv k+l+++p+  re+a+++l++eA++r++dPvyG++g+i+kl +q+++++  la++++
  KHN34059.1   4 RCAACKNQRRKCSSDCIFFPYFPANDPQRFACVHRIYGGSNVGKMLQQIPPYLREQAANTLYFEAQCRIQDPVYGCTGIISKLYEQINNTEIALAHIQT 102
                 6******************************************************************************************99999988 PP

      DUF260 100 el 101
                 ++
  KHN34059.1 103 QI 104
                 75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8393104IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-384101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSSRCAACKN QRRKCSSDCI FFPYFPANDP QRFACVHRIY GGSNVGKMLQ QIPPYLREQA  60
ANTLYFEAQC RIQDPVYGCT GIISKLYEQI NNTEIALAHI QTQIACLKLQ VPQEKAESNF  120
NVLRAQSSGT TEFQWQSQVC WFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3321049111LOB family transfactor Ramosa2.1
5ly0_B5e-3321049111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34059.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595718.14e-88LOB domain-containing protein 24
RefseqXP_028201029.14e-88LOB domain-containing protein 24-like
SwissprotP594672e-42LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594682e-42LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0B2RP221e-103A0A0B2RP22_GLYSO; LOB domain-containing protein 24
STRINGGLYMA05G32320.21e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.17e-45LOB domain-containing protein 24
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]