PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33753.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 117aa    MW: 13471.2 Da    PI: 9.6753
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33753.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-091559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+   + + +a +++ ++   +W+ +a+ +g g+++ ++k ++q
       KHN33753.1 15 CWTPKQNKVFEKALAKYDKDtpdRWHNVAKAIG-GKSEDDVKRHYQ 59
                     6********************************.***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-71264IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-131470IPR009057Homeodomain-like
PfamPF002493.2E-71559IPR001005SANT/Myb domain
CDDcd001672.63E-71662No hitNo description
PROSITE profilePS500906.5391662IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-41662IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MASSTLSKQK PYDSCWTPKQ NKVFEKALAK YDKDTPDRWH NVAKAIGGKS EDDVKRHYQI  60
LLEDLRHIES GHVPIPNYKS TPTTFPLSTT LIMFRGNNLR RSTSNHFALF DDNSYVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-28381276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33753.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-75AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577923.12e-64protein RADIALIS-like 3 isoform X2
RefseqXP_028226976.12e-64protein RADIALIS-like 3 isoform X2
SwissprotQ1A1734e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445KU351e-62A0A445KU35_GLYSO; Protein RADIALIS-like 6 isoform A
TrEMBLA0A445KUU85e-63A0A445KUU8_GLYSO; Protein RADIALIS-like 6 isoform B
TrEMBLK7KHJ65e-63K7KHJ6_SOYBN; Uncharacterized protein
STRINGGLYMA04G01410.28e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-34RAD-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]