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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN33018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 267aa MW: 30005.6 Da PI: 8.6173 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.1e-33 | 60 | 113 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av++LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ KHN33018.1 60 PRLRWTPDLHRCFVHAVQRLGGENRATPKLVLQLMNVKGLTISHVKSHLQMYRS 113 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-32 | 56 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.235 | 56 | 116 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.4E-16 | 58 | 114 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-25 | 60 | 113 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-9 | 61 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSSSSSSLIT TVVVHNNNNN NPSQPSELRA TTRCCFGSHH LPDISLKTPM ARPYVRSKMP 60 RLRWTPDLHR CFVHAVQRLG GENRATPKLV LQLMNVKGLT ISHVKSHLQM YRSMRHEQMS 120 QGAKKNDMAP DFLASTLSTL GQRQQNPHKR SCTEELVPTQ AQWNHDEQEC HNGNQGGESI 180 IIYNGNEQKV HSYIIFEGLL RGQSVQENKT TTPEKVSLGD AGDERDHQRF QDTLSLSMSS 240 RPSSHSFLNR SHTGPDANDV SLELTLC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 5e-57 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597590.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0R0FZ58 | 0.0 | A0A0R0FZ58_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G11576.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9381 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 3e-33 | G2-like family protein |