PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32212.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 229aa    MW: 25028 Da    PI: 10.1564
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32212.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.67e-14114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
       KHN32212.1 114 PWTEEEHRIFLIGLEKLGKGNWRGISKSFVTTRTPTQVASHAQKY 158
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.614522IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.573107163IPR017930Myb domain
SuperFamilySSF466891.08E-17109163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17110162IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-11111157IPR009057Homeodomain-like
SMARTSM007178.0E-10111161IPR001005SANT/Myb domain
PfamPF002499.2E-12114158IPR001005SANT/Myb domain
CDDcd001671.95E-9114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGIARKCSYC GNLGHNARTC KSTPGQGQLK LFGVQLDVSS SSSSSNSFSS SSPSYSGMKR  60
SFSTNYLLSS WASSSVPSSF SSPSLLGANE NSDSYLLNAN SLISTIQDTK KGVPWTEEEH  120
RIFLIGLEKL GKGNWRGISK SFVTTRTPTQ VASHAQKYFL RQSQNSFNKR KHRPSPNLFD  180
NWLSHRPHSL LNWVTTLTST NNCTVQSASP DLELKLATPT PLELSVADA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632752.11e-166probable transcription factor At5g61620
RefseqXP_028235043.11e-166probable transcription factor At5g61620 isoform X1
TrEMBLA0A0B2RK501e-165A0A0B2RK50_GLYSO; Transcription factor MYB1R1
STRINGGLYMA06G05450.21e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-39MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]