PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 487aa    MW: 54556.6 Da    PI: 8.9369
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32131.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08386435147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++ +E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       KHN32131.1 386 RRPFSVDEVEALVQAVEKLGTGRWRDVKVCAFdnaKHRTYVDLKDKWKTL 435
                      6799**************************999**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.66E-7189277IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.903.5E-4191265No hitNo description
PROSITE profilePS500538.568194264IPR000626Ubiquitin domain
PROSITE profilePS5129413.709381440IPR017930Myb domain
SMARTSM007171.1E-7385438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10386436IPR009057Homeodomain-like
CDDcd116603.50E-16387437No hitNo description
SuperFamilySSF466895.77E-16387467IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MCSFEDPLDD NPPALISLGG NAKLSGYNDR IPCSLLSKSR DNVPVVSRDD DENSYGCTHP  60
INTKTKSFRL KTGIGDNRIS KRLASNFQKV AEKTKDHTHS NNDGDWKRTY CSKRNCNKHQ  120
SSQMNIPFKK RKLFNYRSVS NSNELIRSGG IYYSPENCMN QDGCGSPPGM HKDPGMPSLE  180
ACQHQTLRSR GSHVNLRIKS FRVPELFIEV PETATIGSLK RTVMDAVTAV LGGELHIGVF  240
LQGKKVKDDS KTLLQTGISH QNELDALGFT LEPNSSQSLP IVCAAHSPGP KADITQPVIR  300
YPSSPAVIHQ RIQGNSDMLP EHQVTSLGSH FENDHDSAPS PVNASVEKGM KDSKELVTVP  360
EMDEELAMVP VHQKSKRSEI VQRRIRRPFS VDEVEALVQA VEKLGTGRWR DVKVCAFDNA  420
KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL VAHAYWSHQQ TKPQHKHHPE  480
TETVFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-563704751105Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194512.10.0telomere repeat-binding protein 2-like isoform X1
SwissprotQ6R0E31e-116TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A445HM880.0A0A445HM88_GLYSO; Telomere repeat-binding protein 5 isoform A
STRINGGLYMA12G06680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]