PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31362.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 256aa    MW: 28723.9 Da    PI: 5.1681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31362.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.1e-2173122356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  KHN31362.1  73 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 122
                 9******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-4172135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3372130IPR001471AP2/ERF domain
PROSITE profilePS5103223.68372129IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2372130IPR016177DNA-binding domain
PRINTSPR003672.0E-117384IPR001471AP2/ERF domain
PfamPF008476.9E-1573122IPR001471AP2/ERF domain
CDDcd000181.47E-3673131No hitNo description
PRINTSPR003672.0E-1195111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MATVMDMYNT SSIMIPDFLD QCSDQELMKA LEPFMKNVSN SSPNPGSTRP VSEPKAHSHE  60
ARAGFSFFKA QLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDNAAFKLR  120
GENARLNFPH LRHHGARAYG EFGNYKPLPS AVDAKLQAIC QSLGTNSQKL KTQNPIVLDT  180
HKAETETSEF QDFNKVENYQ TSSSSAFSDE YSSSSSPESD ITLLDFSDSC ETMDNLGLDL  240
EKYPSVEIDW AALSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2269129263ATERF1
3gcc_A3e-2269129263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9241910.0JQ924191.1 Glycine max clone Gm11lower_Williams_82 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625788.11e-153ethylene-responsive transcription factor ERF060
SwissprotO656652e-59ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLI1MYT31e-151I1MYT3_SOYBN; Uncharacterized protein
STRINGGLYMA18G02170.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-47related to AP2 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]