PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31158.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 201aa    MW: 23158 Da    PI: 4.7058
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31158.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.82.2e-3281251127
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGf F+Ptdeelv ++L  k++  +++  ++i++++  ++ Pw+L+ k+  + +++yfF+k ++        nra ++gyWk tg ++++ls+ +++
  KHN31158.1   8 LPPGFFFSPTDEELVLHFLYCKASLIPCHP-NIIPDLHPSQLAPWELNGKALLSGNQYYFFTKVNE--------NRARENGYWKDTGVTEPILSTFDKK 97 
                 79*************************999.89**************9666677899999998754........788899***************99** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyr 127
                 vg+kk Lvf+ g+ap+g++t+Wvm+ey 
  KHN31158.1  98 VGMKKYLVFHIGEAPQGTETSWVMQEYY 125
                 ***************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-405159IPR003441NAC domain
PROSITE profilePS5100537.9978160IPR003441NAC domain
PfamPF023652.1E-209125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEDGSVNLPP GFFFSPTDEE LVLHFLYCKA SLIPCHPNII PDLHPSQLAP WELNGKALLS  60
GNQYYFFTKV NENRARENGY WKDTGVTEPI LSTFDKKVGM KKYLVFHIGE APQGTETSWV  120
MQEYYICSSG FDTASYRSAR RRRKHDQSWS KWVLCKVYEK IRSQQGVNCY SDDDDSGSEL  180
SWLDEVYLSL DDDLEEIGMP I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-32616518173NAC domain-containing protein 19
3swm_B9e-32616518173NAC domain-containing protein 19
3swm_C9e-32616518173NAC domain-containing protein 19
3swm_D9e-32616518173NAC domain-containing protein 19
3swp_A9e-32616518173NAC domain-containing protein 19
3swp_B9e-32616518173NAC domain-containing protein 19
3swp_C9e-32616518173NAC domain-containing protein 19
3swp_D9e-32616518173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312090.0KT031209.1 Glycine max clone HN_CCL_4 NAC transcription factor (Glyma04g38990.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304599.11e-151NAC transcription factor 25
RefseqXP_003523223.11e-151NAC transcription factor 25 isoform X1
SwissprotQ8GWK61e-56NC104_ARATH; NAC domain-containing protein 104
TrEMBLI1JY111e-150I1JY11_SOYBN; NAC transcription factor
STRINGGLYMA04G38990.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-59xylem NAC domain 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]