PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 215aa    MW: 24698.8 Da    PI: 6.2926
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30050.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-398106199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rrkC ++C+lapyfp++++k+f n+h+lFG+ +++++lk l++++r+ ams+++ye+++rardP+ G+++++l+lq+q++ + +el+ll +
  KHN30050.1   8 ACAACKYQRRKCGSNCILAPYFPHDRQKQFLNAHRLFGVGKITNMLKPLDQHHRDLAMSTVIYESDMRARDPIGGCYRLVLQLQSQIDYATQELHLLLQ 106
                 7*********************************************************************************************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.2647108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-368103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSRSSTQACA ACKYQRRKCG SNCILAPYFP HDRQKQFLNA HRLFGVGKIT NMLKPLDQHH  60
RDLAMSTVIY ESDMRARDPI GGCYRLVLQL QSQIDYATQE LHLLLQHLAF FKSHPPNSNS  120
PDIINNVTPQ PPYPLEQQIP QEHQQQQQQC FNYNLLQDDI NMWTIQNAVP PLSPLSLEND  180
INQDQDPVVD YGYDQKPGVL DLMDKIKSDD SSAQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-23910112104LOB family transfactor Ramosa2.1
5ly0_B2e-23910112104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187199.11e-159LOB domain-containing protein 22-like
TrEMBLA0A445IES61e-158A0A445IES6_GLYSO; LOB domain-containing protein 22
STRINGGLYMA13G42570.11e-136(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.17e-44LOB domain-containing protein 22
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]