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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN27228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 368aa MW: 39678.2 Da PI: 9.7445 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.5e-38 | 72 | 131 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprC+stntkfCyynnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk++ KHN27228.1 72 PDAALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRN 131 68899****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 56 | 121 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-32 | 74 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 78 | 114 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MVFPSLPIYL DPPNWSQQQP NQQAGIGTNN PQIPPPLQPS PPSSVTTGIG GQGSIRPGSM 60 ADRARMAKIH QPDAALKCPR CESTNTKFCY YNNYSLSQPR HFCKTCRRYW TRGGALRSVP 120 VGGGCRRNKR NKGNSARSKS PMKPSASANS SSSGCTPDHV MMTHLPTPIT PTQFPFLASL 180 HHYNGDYVSG GIGSHFGAIT TPLVARNNGN NTSDVEFQIG TSSASSLGNI SGGAMLSNNG 240 LGDQQWRFNN LQQVQHQFPF LSTNFEPQIG VFQFGGGENN NAEPPNYAKN GGRFDIRSKM 300 DSINSSVSGI VPQLNTIKLE ENQENQGLSL SKNLLMTSSG NGVLWNNGSS GNAWSEVPSF 360 IPSPNHLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520022.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like isoform X1 | ||||
TrEMBL | A0A0B2R5J5 | 0.0 | A0A0B2R5J5_GLYSO; Dof zinc finger protein DOF3.6 | ||||
STRING | GLYMA02G10250.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 1e-36 | DNA binding with one finger 2.4 |
Publications ? help Back to Top | |||
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