PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN27228.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 368aa MW: 39678.2 Da PI: 9.7445

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27228.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.9	4.5e-38	72	131	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprC+stntkfCyynnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk++ KHN27228.1 72 PDAALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRN 131 68899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	56	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	74	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MVFPSLPIYL DPPNWSQQQP NQQAGIGTNN PQIPPPLQPS PPSSVTTGIG GQGSIRPGSM 60 ADRARMAKIH QPDAALKCPR CESTNTKFCY YNNYSLSQPR HFCKTCRRYW TRGGALRSVP 120 VGGGCRRNKR NKGNSARSKS PMKPSASANS SSSGCTPDHV MMTHLPTPIT PTQFPFLASL 180 HHYNGDYVSG GIGSHFGAIT TPLVARNNGN NTSDVEFQIG TSSASSLGNI SGGAMLSNNG 240 LGDQQWRFNN LQQVQHQFPF LSTNFEPQIG VFQFGGGENN NAEPPNYAKN GGRFDIRSKM 300 DSINSSVSGI VPQLNTIKLE ENQENQGLSL SKNLLMTSSG NGVLWNNGSS GNAWSEVPSF 360 IPSPNHLL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MVFPSLPIYL DPPNWSQQQP NQQAGIGTNN PQIPPPLQPS PPSSVTTGIG GQGSIRPGSM  60
ADRARMAKIH QPDAALKCPR CESTNTKFCY YNNYSLSQPR HFCKTCRRYW TRGGALRSVP  120
VGGGCRRNKR NKGNSARSKS PMKPSASANS SSSGCTPDHV MMTHLPTPIT PTQFPFLASL  180
HHYNGDYVSG GIGSHFGAIT TPLVARNNGN NTSDVEFQIG TSSASSLGNI SGGAMLSNNG  240
LGDQQWRFNN LQQVQHQFPF LSTNFEPQIG VFQFGGGENN NAEPPNYAKN GGRFDIRSKM  300
DSINSSVSGI VPQLNTIKLE ENQENQGLSL SKNLLMTSSG NGVLWNNGSS GNAWSEVPSF  360
IPSPNHLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520022.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like isoform X1
TrEMBL	A0A0B2R5J5	0.0	A0A0B2R5J5_GLYSO; Dof zinc finger protein DOF3.6
STRING	GLYMA02G10250.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-36	DNA binding with one finger 2.4

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]