PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25529.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 191aa    MW: 21284.3 Da    PI: 8.5882
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25529.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.21.3e-3341032100
      DUF260   2 CaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 C aCk++rr+C +d C++apyfpae+ ++fa+vh++FG  nv ++l+ ++++ r  ++++l+y+Aear+rdPv+G+vg+i++l+++ +++k++la+++ 
  KHN25529.1   4 CGACKYQRRRCYSDiCMFAPYFPAENIQRFACVHHVFGGGNVGSMLNITKPKLRGWVVKTLAYQAEARVRDPVHGCVGLIRELEENHRKVKEDLAKAQM 102
                 ***********9999********************************************************************************9997 PP

      DUF260 100 e 100
                 e
  KHN25529.1 103 E 103
                 6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.7132104IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-334101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSTCGACKYQ RRRCYSDICM FAPYFPAENI QRFACVHHVF GGGNVGSMLN ITKPKLRGWV  60
VKTLAYQAEA RVRDPVHGCV GLIRELEENH RKVKEDLAKA QMELARYMGP EFVRKLSPNY  120
GGESSLKGKF VAHLQPTTME LDFAPSIAID VDDLDKWDPF PPWETSFQNV GPSSSHAHGE  180
GGNRKGKGVA P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-30210710114LOB family transfactor Ramosa2.1
5ly0_B9e-30210710114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601001.11e-144LOB domain-containing protein 24
RefseqXP_028208329.11e-144LOB domain-containing protein 24-like
SwissprotQ32SG34e-32LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A0B2QZR91e-142A0A0B2QZR9_GLYSO; LOB domain-containing protein 6
TrEMBLK7MM901e-142K7MM90_SOYBN; Uncharacterized protein
STRINGGLYMA17G20486.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1945945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23660.25e-34LOB domain-containing protein 10
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]