PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23316.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 503aa    MW: 53865.9 Da    PI: 8.8495
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23316.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.75.5e-25124167144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  KHN23316.1 124 DPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 167
                 79***************************************998 PP

2QLQ54.34e-1972104234
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                 +FT aQ+ +L++Q+++yKy++a++PvP++Ll +
  KHN23316.1  72 PFTSAQWRELERQAMIYKYMMASVPVPHDLLTP 104
                 8*****************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-1171107IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.56772107IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.2E-1372103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.739124168IPR014977WRC domain
PfamPF088791.7E-20125167IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSFTNHINLV SGASSVLGPA IDAGCGAAPP APVRTLQPFD ISSYTSSPTS TTTTFNFKPP  60
SAGVMAASLG FPFTSAQWRE LERQAMIYKY MMASVPVPHD LLTPSSRSSC MDGGFNLRLA  120
NSTDPEPGRC RRTDGKKWRC SRDVAPNHKY CERHMHRGRP RSRKPVEVNT NSTTTPTSVN  180
NNNHQIKKAR HECNNNPFAT PDVTAAISNP TSRKNGSSPH FLGSTTTQPY LDSSLSLDNF  240
GLKAASFDSV ASVSANKEPR GLEWMLNGDP ISLGASDSQW QSLMHNKDGM TSVSSCNTTE  300
SQYLNSLALY NSGLEQQNRR HPLFLNPLVV PMENLQPEKP RGFIDAWSNA ESNANTNTTN  360
KNSAASIGKL SLSSLDLSMG GAAVNEDVGN VNMGLGLMEP NGKTHTGTKI SLSNWQNPAP  420
WVASSLGGPL AEVLRSSTVT ATTTTNEATS NTPSPATTTH AESPSGVLQK TLVSLSDSSN  480
NSSPRVASSR ANSEMALLRF QSN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23316.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028236185.10.0growth-regulating factor 7-like isoform X1
SwissprotQ9FJB82e-38GRF7_ARATH; Growth-regulating factor 7
TrEMBLA0A445K9670.0A0A445K967_GLYSO; Growth-regulating factor 7 isoform A
STRINGGLYMA06G13960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73242842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.12e-39growth-regulating factor 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]