PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22248.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 77aa    MW: 9131.07 Da    PI: 6.0912
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22248.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-10345444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT eE  ++ da + +G++   +W  +a+ +g g++  ++k ++
       KHN22248.1  3 WTREENRRFEDALAVHGPDdpnRWQHVANAVG-GKSVQEVKMHY 45
                     *****************99*************.********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.323152IPR017884SANT domain
SMARTSM007170.0082351IPR001005SANT/Myb domain
CDDcd001672.20E-7345No hitNo description
SuperFamilySSF466895.31E-12356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-5345IPR009057Homeodomain-like
PfamPF002492.1E-8345IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MGWTREENRR FEDALAVHGP DDPNRWQHVA NAVGGKSVQE VKMHYEIPQE DVIRIERDQI  60
PLPSYRGNER QIHNEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-183771185RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN22248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984111e-124BT098411.1 Soybean clone JCVI-FLGm-12O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528087.13e-50protein RADIALIS-like 6
RefseqXP_028234794.13e-50protein RADIALIS-like 6
SwissprotQ1A1731e-21RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445K4756e-49A0A445K475_GLYSO; Protein RADIALIS-like 6
TrEMBLC6TL356e-49C6TL35_SOYBN; Uncharacterized protein
STRINGGLYMA06G03460.11e-49(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-24RAD-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]