PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21534.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 802aa    MW: 89374.7 Da    PI: 7.02
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21534.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-22161262199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f k+lt+sd++++g + +p++ +e++      + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el+
  KHN21534.1 161 FRKTLTTSDTNTHGGFFVPRRAVEDCfprldyK-QQRPSQELVAKDLYGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGENGELR 256
                 89****************************963.3445679************************************************..4499999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  KHN21534.1 257 LGIRRA 262
                 ***996 PP

2Auxin_resp119.23.2e-39287369182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+s ks+F+v+Y+Pras+++Fvv+++k+ k++k++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp++Wp+SkWr+L
  KHN21534.1 287 VANAISAKSMFHVFYSPRASHADFVVPYQKYIKSIKNPVTIGTRFKMKFEMDESPERRCtSGIVTGMSDLDPYKWPKSKWRCL 369
                 689********************************************************9**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-40152273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-37154272IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-21159261No hitNo description
SMARTSM010191.4E-21161263IPR003340B3 DNA binding domain
PfamPF023621.5E-20161262IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281161263IPR003340B3 DNA binding domain
PfamPF065072.0E-33287369IPR010525Auxin response factor
PfamPF023097.6E-7664756IPR033389AUX/IAA domain
PROSITE profilePS5174521.035673755IPR000270PB1 domain
SuperFamilySSF542776.47E-10676752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MEIDLNDDAV TSEAEKSASC NEECEKGAAF ALSSSTCSSS GSSSARVSSS YLELWHACAG  60
PLTSLPKKGN VVVYFPQGHL EQASSFSPFS PMEMPTYDLQ PQIFSRVVNI QLLANKENDE  120
VYTQVTLLPR AEYLEGKELE ELGTYEEGNE TTPTKSTPHM FRKTLTTSDT NTHGGFFVPR  180
RAVEDCFPRL DYKQQRPSQE LVAKDLYGVE WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV  240
SGDAVLFLRG ENGELRLGIR RAARPRNGLP ESIVGSQSYY PNFLSSVANA ISAKSMFHVF  300
YSPRASHADF VVPYQKYIKS IKNPVTIGTR FKMKFEMDES PERRCTSGIV TGMSDLDPYK  360
WPKSKWRCLM VRWDEDIEIS HQDRVSPWEI DPSSSLPPLS IQSSRRLKKL RPGLQAATPS  420
HLTTAGGSGF MDSEESVRSS KVLQGQENTG FMSLYYGCDK VTKQPEFEIR SPSHPNLAST  480
GVRKISAAEF MRVHPSSFAG FSETNMFPRV LQGQEICPFR SLTGKADLNF GSWGKPNVSY  540
SNNNLHQATK PSFHSLGPEV IQTAYFPYGD IHNAGQGSSI LCSKPTNFQR ENIPFNTPST  600
QSGIMRNEVG RSDITIPNEQ KLQDNISGTA SLGANMRIPK DDNFKGQVKA CKLFGISLSG  660
ETTAQNLQNS AKRSCTKVHK QGSLVGRAID LSRLSSYNDL LIELERLFSM EGLLIDPNKG  720
WRILYTDSEN DIMVVGDDPW HEFCDVVSKI HIHTQDEVEK MTIGMMINDD TQSCLEQAPV  780
TMEASKSSSV GQPDSSPTVV RM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1125339522357Auxin response factor 1
4ldw_A1e-1125339522357Auxin response factor 1
4ldw_B1e-1125339522357Auxin response factor 1
4ldx_A1e-1125339522357Auxin response factor 1
4ldx_B1e-1125339522357Auxin response factor 1
4ldy_A1e-1125339522357Auxin response factor 1
4ldy_B1e-1125339522357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21534.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028190393.10.0auxin response factor 4-like isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A445IDG90.0A0A445IDG9_GLYSO; Auxin response factor
STRINGGLYMA13G40310.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  4. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  5. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  6. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  7. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]