PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21482.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 249aa    MW: 26976.2 Da    PI: 8.1115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21482.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011118140123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  ++
  KHN21482.1 118 YECKTCNRTFPSFQALGGHRARC 140
                 99*********999998887776 PP

2zf-C2H213.60.0002158180123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  KHN21482.1 158 HECSICGSEFTSGQALGGHMRRH 180
                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-6117180No hitNo description
PfamPF139128.0E-11117139IPR007087Zinc finger, C2H2
SMARTSM0035551118138IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-11158182IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076158185IPR007087Zinc finger, C2H2
SMARTSM003550.019158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDMEELVSCN NNDATNIAKG KRTKRRLRPL VPTTTTITTV TAATTPIMTS SCSSASCGGG  60
SSSSTTFEEE EEDMANCLIL LAQGKVGGDP PHRHKDLYGS DVKTEKLGST KVDHFYVYEC  120
KTCNRTFPSF QALGGHRARC GNNNKVGLNF HGNKSKIHEC SICGSEFTSG QALGGHMRRH  180
RASTNNNNIV QTTTTTSNGA VDVKPRNVLE LDLNLPAPED DLRDSKFQFP ATQNSMMRSA  240
APALVGCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21482.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311510.0KT031151.1 Glycine max clone HN_CCL_218 C2H2-Zn transcription factor (Glyma13g39620.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304533.21e-114C2H2-type zinc finger protein 3
RefseqXP_028192885.11e-114zinc finger protein ZAT5-like
SwissprotQ681X41e-49ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0B2R6Z21e-113A0A0B2R6Z2_GLYSO; Zinc finger protein ZAT5
TrEMBLI1LTN71e-113I1LTN7_SOYBN; C2H2-Zn transcription factor
STRINGGLYMA12G30270.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-49C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]