PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21055.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 168aa    MW: 18802.5 Da    PI: 7.775
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21055.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.16.8e-292102196
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C+l+ ++     p++q++++ +++k+FG+s ++++++++pe++r+++++sl++e++ r+ +Pv+Gavg++++++++++q+++e+
  KHN21055.1   2 SCNGCRVLRKGCSDTCPLRSCLqwiesPESQRHATLFLAKFFGRSDLISFISSVPETKRPALFQSLLFEGCGRMVNPVNGAVGLLSSGKWHVCQAAVET 100
                 6**********************************************************************************************9998 PP

      DUF260  95 al 96 
                 +l
  KHN21055.1 101 VL 102
                 65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6351107IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDTCPLR SCLQWIESPE SQRHATLFLA KFFGRSDLIS FISSVPETKR  60
PALFQSLLFE GCGRMVNPVN GAVGLLSSGK WHVCQAAVET VLDGGVLRPS SETFTGDSDD  120
TRYHLRTLTL MHDVREMNEN SSLMNRPQEL EMASYGNHKK NQILNLFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028208881.11e-124LOB domain-containing protein 39-like
SwissprotQ9SZE88e-60LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0B2QIB31e-122A0A0B2QIB3_GLYSO; LOB domain-containing protein 39
STRINGGLYMA17G35440.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-62LOB domain-containing protein 39
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]