PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20912.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 231aa    MW: 25430.4 Da    PI: 5.9561
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20912.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.7e-3818116198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC++dCv+apyf  +q + +fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lq+q+++l++e+++l+
  KHN20912.1  18 SCGACKFLRRKCTSDCVFAPYFSYDQaSTHFAAVHKIYGASNVSKLLSHLPIHNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDALG 116
                 6***********************99779*****************************************************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576119No hitNo description
PROSITE profilePS5089122.47917119IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-3718115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSIKSVKNFG TTTGFGSSCG ACKFLRRKCT SDCVFAPYFS YDQASTHFAA VHKIYGASNV  60
SKLLSHLPIH NRSDAAITIS YEALARMQDP IYGCVAHIYA LQHQVASLQE EIDALGSLMA  120
NSTVSVVNCG SDQEPMTSNN GTQYNILQHD ATRTQYCQNN LANFLSQEAI SATVFKSLDS  180
QMDIELPSAH VEEPSSFGDF NSNPLEQFLS GIDQEVFVNH PWFKHNADIK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-39111144106LOB family transfactor Ramosa2.1
5ly0_B6e-39111144106LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-123AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596617.11e-151LOB domain-containing protein 33
TrEMBLA0A445H2G41e-173A0A445H2G4_GLYSO; LOB domain-containing protein 33
TrEMBLK7M5B31e-173K7M5B3_SOYBN; Uncharacterized protein
STRINGGLYMA14G07260.21e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-56LOB domain-containing protein 33
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]