PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20206.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 263aa    MW: 29182.1 Da    PI: 6.7207
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20206.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.51.1e-54781802101
       NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                 l++fw++q   i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivp
  KHN20206.1  78 LQAFWANQyqeIKKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 176
                 89*****9888999************************************************************************************* PP

       NF-YC  98 rdel 101
                 r++l
  KHN20206.1 177 REDL 180
                 *987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.34E-3267171IPR009072Histone-fold
PfamPF008081.7E-2199162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-37100177IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDNQGHGHGQ NPSMGIVGNG PQLPYGSNPY QASHITGSPG MVVASPGTIQ STGQPAATQL  60
GQHQLAYQQQ QQQLQQRLQA FWANQYQEIK KVTDFKNHSL PLARIKKIMK ADEDVRMISA  120
EAPVIFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL  180
KDEVLASMPR GTVPVTGPAE ALPYCYIPPQ HAQQVGAAGV MMGNKPVMDP YAQQSHPYNM  240
APQMWPQLLP PPPPEQQQSS PDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C3e-4187177294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B3e-4187177294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628103.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B22e-82NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A0B2QF830.0A0A0B2QF83_GLYSO; Nuclear transcription factor Y subunit C-9
TrEMBLI1NIX70.0I1NIX7_SOYBN; Uncharacterized protein
STRINGGLYMA20G37620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.48e-80nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]