PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18688.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 286aa    MW: 31870.4 Da    PI: 8.1752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18688.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015101123123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  KHN18688.1 101 YECKTCNRCFPSFQALGGHRASH 123
                 99**********99999998887 PP

2zf-C2H213.80.00017196218123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  Fs+   L  H+r+H
  KHN18688.1 196 HECSICGAEFSSGQALGGHMRRH 218
                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.14E-8100123No hitNo description
SMARTSM003550.14101123IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-10101125IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576675.14E-8191218No hitNo description
PfamPF139128.3E-13195219IPR007087Zinc finger, C2H2
SMARTSM003550.01196218IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743196218IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQKQEELNAE CKDHMQIIKG KRTKRQRLPS PLRLTMSTTC SSLGGRSSTE NSLGFDLPTT  60
SNESRNEEED MANCLILLAQ GDRNNSTPKP SHNNKGGLYL YECKTCNRCF PSFQALGGHR  120
ASHKKYYSKA SAEEKQGVLA TFVNEVDNNN NHNHDDYYCD TTSTTLTLQL STALYNNNNS  180
SSNTRMSTIN AKCKVHECSI CGAEFSSGQA LGGHMRRHRN FGSAPTCGAI NANRESKKHN  240
KDVLNLDLNL PAPEDDHHRE SKLFPFQAKE KVIVFSATSS LVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18688.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939740.0BT093974.1 Soybean clone JCVI-FLGm-18A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225902.10.0zinc finger protein ZAT5-like
TrEMBLA0A445LE130.0A0A445LE13_GLYSO; Zinc finger protein ZAT5
STRINGGLYMA03G34320.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-50C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]