PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18504.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 273aa    MW: 29826.4 Da    PI: 9.4558
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18504.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1465111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++l++ + ++ G+g+W+ I++   k+Rt+ q+ s+ qky
       KHN18504.1  65 RVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKY 111
                      789*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.67360116IPR017930Myb domain
SuperFamilySSF466899.33E-1764117IPR009057Homeodomain-like
SMARTSM007178.1E-1164114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-1164111IPR009057Homeodomain-like
PfamPF002492.2E-1265111IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.0E-1665114IPR006447Myb domain, plants
CDDcd001676.39E-1067112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSRASSAADS AASGEIILFG VRVVVDSMRK SVSMSNLSQY EHPQDGSNNK DALSIIIFFL  60
SIFNRVPWTE EEHKLFLVGL QKVGKGDWRG ISKNYVKTRT PTQVASHAQK YFLRRSNLNR  120
RRRRSSLFDI TTDTVSAIPM EGEQVQNQDT LSHSQQQSPL FPAETSKING FPMMPVYQFG  180
FGSSGVISVQ GGNGNPMEEL TLGQGNVEKH NVPNKVSTVS DIITPSSSSS AVDPPTLSLG  240
LSFSSDQRQT SSRHSALHAI QCFSNGESII SVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18504.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5502090.0FJ550209.1 Glycine max cultivar Harosoy63 isoflavonoid regulator (MYB176) mRNA, complete cds.
GenBankKT0311910.0KT031191.1 Glycine max clone HN_CCL_30 MYB/HD-like transcription factor (Glyma05g01640.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238640.11e-164MYB transcription factor MYB173
RefseqXP_028210669.11e-164transcription factor MYB1R1-like
SwissprotQ2V9B06e-52MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A445G4E51e-163A0A445G4E5_GLYSO; Transcription factor MYB1R1
TrEMBLQ0PJH91e-163Q0PJH9_SOYBN; MYB transcription factor MYB173
STRINGGLYMA17G10250.21e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.23e-42MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]