PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16118.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 1115aa    MW: 125440 Da    PI: 9.386
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16118.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-104682341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W++eE e++++a +++G++ Wk++a+ +  +R+ +++ 
       KHN16118.1 46 QWSKEELERFYEAYRKYGKD-WKKVAAVVR-NRSTEMVE 82
                     6*****************99.*********.***98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.49E-114190IPR009057Homeodomain-like
PROSITE profilePS5129310.8344295IPR017884SANT domain
SMARTSM007177.3E-64391IPR001005SANT/Myb domain
PfamPF002493.2E-94686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-64685IPR009057Homeodomain-like
CDDcd001671.04E-64788No hitNo description
SMARTSM011353.6E-56626727IPR033471DIRP domain
PfamPF065841.4E-32626726IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1115 aa     Download sequence    Send to blast
MAPTRKSRSV NKRMSSSNDN SPEKDGVNSN KSKQRKRKLT DKLGSQWSKE ELERFYEAYR  60
KYGKDWKKVA AVVRNRSTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSDS  120
ERESNDAPGS RKPVKRKREK VQLSISKDQS HSIASSDDCL SILKKRRFDG IQLKPHAVGK  180
RTPRVPVYKK DDTENYVSPY RRSLKSTIDA NDDEVAHVVA LALTEAAQRG GSPQVSQTPS  240
RRVEQKSSPI QSWERKHQMS KTARAKFPDV SVDKEVLEGS IESRGAENEE YAKDNSSLMD  300
TEGIDTAEVF QKEGQFYRKR ERVKNVGNHQ LDDGGEACSG TEEGLSFNSL KEKVDIEVTN  360
EKLEKFSPKS HRKRNKKLFF GDETPALNAL QTLADLSLMM PISTMESESS IQLKGERMVA  420
DKNNRSALPE ATSTSHKRHK LKYSVVPKIE VSTSKESKIG KEPTKDTNAL SESKEKLPFA  480
DTAWKRKRKS MGSKVASAKL DSYPSGPLKD EALDDGNKPV VKGKHTDQAF TLPKQLKTVK  540
SSESSLCSDQ KDLTVSTAEI PLLNEVSLPT KQRKRKMILQ RTSLPKEKSS DYILKSQSNK  600
YSTLKEKLSS CLSSNMVRRW FVFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW  660
SVIKSSLGKP RRFSEHFLCE ERHKLEQYRE SVRKHYTELR TGIRDGLPTD LAKPLYVGQR  720
VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMD IDCMPLNSSD NMPEALRRHI  780
GSPISSFMNK EPQISGNSNF GGCEMNHSSP VKAKVATVDN LCAQAGCAQP CKVTHHQAKE  840
ADIQAVSELK HALDKKETLL MELRSANSDI LENKNGIDCL KDSEVFKKHY ATVSDAMLQL  900
RQRNTYRGNS LPSWMKPQAS FNVHDDLPSM LDSSLTQELG STVVQVIKGS RLRAHAMVDA  960
AFQALSLAKE GEDAFIKIGQ ALDSINHQQL ASQSRLPVIR SQEQVNANGS FYHLNHSTSG  1020
VSEPILNDPS LPKPHNCSDK FDTELPSDLI TSCVATLIMI QTCTERQYPP ADVAQILDSA  1080
VTSLHPCCSQ NLPIYREIQM CMGRIKTQML ALIPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1571576QRKRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN16118.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353621e-158AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028184339.10.0protein ALWAYS EARLY 2-like isoform X5
RefseqXP_028184340.10.0protein ALWAYS EARLY 2-like isoform X5
RefseqXP_028184342.10.0protein ALWAYS EARLY 2-like isoform X5
RefseqXP_028184343.10.0protein ALWAYS EARLY 2-like isoform X5
TrEMBLA0A445IMZ10.0A0A445IMZ1_GLYSO; Protein ALWAYS EARLY 3 isoform D
STRINGGLYMA10G29481.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]