PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14648.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 697aa    MW: 76629.4 Da    PI: 6.3626
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14648.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.39.7e-25217268153
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                 kpr++W+ eLH++F+ av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ +
  KHN14648.1 217 KPRVVWSVELHQQFMAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQLF 268
                 79*******************.*****************************87 PP

2Response_reg61.93.3e-21311491109
                   EEEESSSHHHHHHHHHHHH....HTTC......EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
  Response_reg   1 vlivdDeplvrellrqale....kegy......eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                   vl+vdD+p+ +++l+++l+    +  +        v+ ++ +e al ll+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a + +  
    KHN14648.1  31 VLVVDDDPTCLMILERMLRaclyE-AIylfklmLFVTKCQRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKHV 125
                   89*****************87742.33244443468999**********999999**********************6654.8************** PP

                   HHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                   + + +  Ga d+l Kp+ +e+l +
    KHN14648.1 126 VMKGVTHGACDYLIKPVRIEALKN 149
                   ********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1596689IPR017053Response regulator B-type, plant
SuperFamilySSF521721.21E-3028159IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.7E-3728182No hitNo description
SMARTSM004481.9E-2329151IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.62430155IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.8E-1931149IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.51E-2532155No hitNo description
SuperFamilySSF466892.51E-16214268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-24216267IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-21217268IPR006447Myb domain, plants
PfamPF002491.1E-5219266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MNLSNGKGST SSSPLKAGDS VSDQFPAGLR VLVVDDDPTC LMILERMLRA CLYEAIYLFK  60
LMLFVTKCQR AEVALSLLRE NKNGFDIVLS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD  120
DGKHVVMKGV THGACDYLIK PVRIEALKNI WQHVIRKRKN GLRDVEQSGS VEEGDQPPKV  180
SDDGDYSSSV NEARSSKKRR DEDEEGDEKD DSSTLKKPRV VWSVELHQQF MAAVNQLGID  240
KAVPKKILEL MNVPGLTREN VASHLQLFEG VNSFAVWFLV QKYRLYLRRL SGVSQQQGNL  300
NNSFMSSQEA TFGGTSINGI DLQTLSAAGQ FPSQSLAKLQ ATGLGRTTAK AGVPMPLSDQ  360
KNLFSFENPR LRFGEGSLQH LSNSKPINLL HGIPTNMEPK QLANLHQSTQ PLGSLNMRVN  420
APVTQNNPLL MQMAQSQPRG QMLGENAGSH VTRFPSSLVQ PTVSNGISNG VLGNGIAGTS  480
NITTYNPVQQ NSSLLSFPMN QTNEISVSNF PLRSSPGITS ITNKGMFHEE GTSGIKGPGG  540
FVQGYDMFNE LHHQKSHDWD LTNTGMTYDA AHHANPLQGN IDVSPSVLVH QSFPTMHQTV  600
QNRDTTSIGK AMFSTGEGMH QSNLQNVGQH HNNLLLDNSV RVKAERIPDP SCQINNLFAD  660
QYGQEDLVSA FLKQQESIGT SENEFDFDGY SLDNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19216268456ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546340.10.0two-component response regulator ARR2
RefseqXP_028204398.10.0two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0B2Q3U00.0A0A0B2Q3U0_GLYSO; Two-component response regulator ARR2
STRINGGLYMA15G15520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39583458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.20.0response regulator 1
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]