PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14528.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 86aa    MW: 9965.05 Da    PI: 7.8278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14528.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08550245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+W+  + + + +a + + ++   +W  +a+ +g g+t++++k ++ 
       KHN14528.1  5 GSWSVKDNKAFEKALAVYDKDtpdRWYNVAHAVG-GKTPEEVKRHYE 50
                     89********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.416257IPR017884SANT domain
SMARTSM007172.9E-7355IPR001005SANT/Myb domain
PfamPF002491.5E-6450IPR001005SANT/Myb domain
SuperFamilySSF466892.03E-12561IPR009057Homeodomain-like
CDDcd001674.14E-6653No hitNo description
Gene3DG3DSA:1.10.10.603.7E-6659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
IQVTGSWSVK DNKAFEKALA VYDKDTPDRW YNVAHAVGGK TPEEVKRHYE LLVQDVKHIE  60
SGRVPFPNYK KTTSESTDQE EKRYHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-367861189RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14528.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150375e-79AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236080.21e-54MYB transcription factor MYB142
RefseqXP_028217666.11e-54protein RADIALIS-like 3
SwissprotQ58FS32e-36RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A0B2Q3G83e-57A0A0B2Q3G8_GLYSO; Uncharacterized protein (Fragment)
STRINGGLYMA03G28050.15e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-36RAD-like 1
Publications ? help Back to Top
  1. Corley SB,Carpenter R,Copsey L,Coen E
    Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73
    [PMID:15790677]
  2. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  3. Stevenson CE, et al.
    Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8
    [PMID:16511186]
  4. Stevenson CE, et al.
    Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus.
    Proteins, 2006. 65(4): p. 1041-5
    [PMID:17044043]
  5. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]