PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13609.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 501aa    MW: 54273 Da    PI: 6.7275
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13609.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.86.6e-40137197262
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 
  KHN13609.1 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSA 197
                 7899******************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-31134194IPR003851Zinc finger, Dof-type
PfamPF027012.8E-32139195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.947141195IPR003851Zinc finger, Dof-type
PROSITE patternPS013610143179IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSEVKDPAIK LFGKTIPVPE IPRGSAGAPA SSSGDVVDDS VDASSTNSSR ESHTKRDALG  60
KDVDKDTLGE KPTDDKKEDG APTQSSEEVT NLDTASGSCE ESVALSTERE ATTLKTTKTE  120
EEQSETSNSQ DKNLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKSSASHY RQITVSEAAL QNPRTDLPNG AYHPSLKCNG TVLTFGTDTP  240
LCESMASVLN LADKTMPNYT RNGFHKPEEL RIPVPHASGE KGDDQSNKSS VTSTTSVEGA  300
ITNGPKEQVV QNCQSFPPQV PYFPGTPWPI PWNPVQWSSP VPPPAFCPPG FTMPFYPATA  360
YWGCAVPGTW NIPWLVQPSS PNGATPNSGP NSPTLGKHSR EDSTFKSNES GGEDGHSKEN  420
NKEKSLWVPK TLRIDDSEAA KSSIWATLGI KNDKADSVPG GTLFKAFPSK HDDKNHSMQA  480
SPVLQANPAA LSRSLNFHET S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551736.10.0PREDICTED: cyclic dof factor 2-like
TrEMBLA0A0B2Q0U20.0A0A0B2Q0U2_GLYSO; Dof zinc finger protein DOF5.2
TrEMBLI1N4E50.0I1N4E5_SOYBN; Uncharacterized protein
STRINGGLYMA18G49520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-103cycling DOF factor 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]