PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13386.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 276aa    MW: 30233.1 Da    PI: 4.9105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13386.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-1292135755
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 ++ErrRR+++N+++  Lr+++P+ +      K++ a+iL  A++Y+++Lq
  KHN13386.1  92 MAERRRRKKLNDKLYMLRSVVPNiS------KMDRASILGDAIDYLRELQ 135
                 79*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.17785134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1786152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-1591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1091135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-1692146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-1292135No hitNo description
CDDcd048731.41E-6205265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPPPPPPQLA MEKRRKRGEQ GEDEGGLNYE SGEDMKLEEN GVDANNNDND NDDDDDDDDG  60
DGDGDNGNGG GGGGDQKGKK KKKKKMPAKN LMAERRRRKK LNDKLYMLRS VVPNISKMDR  120
ASILGDAIDY LRELQVRITD LNHELESGPP GSSLPPAASF HPVTPTLPTL PCRVKEEICP  180
ISLPSPKNQS AKVEVTVREG GAVNIHMFCA HRPGLLLSTM RAMDSLGLDV QQAVISCFNG  240
FSLDVFRAEQ CREGQDVLPE QIKEVLLDTA GFHGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884KKKKKKK
27896KKKKKKKMPAKNLMAERRR
38299KKKMPAKNLMAERRRRKK
493100ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9899290.0HM989929.1 Glycine max ICEe mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241335.11e-146uncharacterized protein LOC100805320
SwissprotQ9LSE21e-105ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B2PVN10.0A0A0B2PVN1_GLYSO; Transcription factor ICE1
STRINGGLYMA16G26291.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-97bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]