PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 311aa    MW: 33837.4 Da    PI: 10.2684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13004.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.8e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
       KHN13004.1  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55
                     79***********************************9***********99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.669161IPR017930Myb domain
SuperFamilySSF466897.49E-15267IPR009057Homeodomain-like
SMARTSM007172.9E-5459IPR001005SANT/Myb domain
PfamPF002493.2E-7555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-12556IPR009057Homeodomain-like
CDDcd116608.66E-18657No hitNo description
PROSITE profilePS5150420.466115191IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.35E-15121200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.1E-10121186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.0E-13124191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.2E-8128184IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLLPSP KIDHNHMALS TVVQRDKEVA DPKPLAVSSG TSPNSKEKTS  120
KLQNFQLDNL ILESIIKLKE PRGSDKAAIA AYIEDQYCST PTLRKLLSTK LKHMVACGKL  180
MKVKHKYRIA TNLTISEKRR CSSLVLLEGR PKDSPKAEKT GVHILSKSEI DAELVKGLTA  240
QEAAAAAAKA VAEAEAAIAE AEAAAREADA AEAEAEAARV FAKAAMKALK CKTLRVCSIS  300
PFPIAYPIVP E
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353061e-168AC235306.1 Glycine max strain Williams 82 clone GM_WBb0068C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186271.10.0telomere repeat-binding factor 2-like isoform X1
RefseqXP_028186272.10.0telomere repeat-binding factor 2-like isoform X1
SwissprotQ9FJW55e-74TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A0B2PZ940.0A0A0B2PZ94_GLYSO; Histone H1
STRINGGLYMA11G05070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-69telomere repeat binding factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  3. KotliƄski M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]