PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 444aa    MW: 50134.1 Da    PI: 4.9553
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13000.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.25.5e-891074133309
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + Lle A+av+++++++ q+l++ l+el+sp+gd+ q+la+yf++A  +r+++ ++++yk+l++ ++++ + +++ + +  f+e+sP+ +f+h++ N a
  KHN13000.1 107 DILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRITQAGDRTYKTLASASEKTCSFESTRKTVLKFQELSPWTTFGHVASNGA 205
                 689***********************************************************8887775554444455555****************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpg 199
                 Ilea+ege ++Hi+D++ ++++QWp+L++aLa+R++++p+lR+T v+ + ++ ++ ++e+g r++kfA+ +gvpf+fnv+++  +l+dl+++ L++k++
  KHN13000.1 206 ILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTAGATAQKVMKEIGARMEKFARLMGVPFKFNVVHHVgQLSDLDFSVLDIKED 304
                 ************************************************9999***************************96656*************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 Eala+n+v  lh++     ++ ++rd+v++ +++l+P++v+vve+ead++ +    +F+++f e+l+++ + f++l++++pr+s+er ++Er+  gr++
  KHN13000.1 305 EALAINCVNTLHSIA----AVGNHRDAVISSLRRLKPRIVTVVEEEADLDIGlegfEFVKGFEECLRWFRVYFEALDESFPRTSNERLMLERA-AGRAV 398
                 **************8....888899*********************99855555669************************************.***** PP

        GRAS 295 vnvvacegaerrerh 309
                 v++vac+ ae++er+
  KHN13000.1 399 VDLVACSPAESVERE 413
                 **********99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.32479444IPR005202Transcription factor GRAS
PfamPF035141.9E-86107413IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDTTLFRVVS SFQHHQADQD HQSLNNSTTS SSSRSSRQEQ NYPYPQEHDE ECFNFFMDDE  60
DLSSSSSKHY YPYQPHPPST TDHSFSPTPG VDVVFPFEFS SGKWAQDILL ETARAVADKN  120
TTRLQQLMWM LNELSSPYGD TDQKLASYFL QAFFSRITQA GDRTYKTLAS ASEKTCSFES  180
TRKTVLKFQE LSPWTTFGHV ASNGAILEAL EGEPKLHIVD ISNTYCTQWP TLFEALATRN  240
DDTPHLRLTS VVTAGATAQK VMKEIGARME KFARLMGVPF KFNVVHHVGQ LSDLDFSVLD  300
IKEDEALAIN CVNTLHSIAA VGNHRDAVIS SLRRLKPRIV TVVEEEADLD IGLEGFEFVK  360
GFEECLRWFR VYFEALDESF PRTSNERLML ERAAGRAVVD LVACSPAESV EREGWAMTQC  420
SDAGIFLTWK EQPVVWASAW RALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2513939237285GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353060.0AC235306.1 Glycine max strain Williams 82 clone GM_WBb0068C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538789.10.0PREDICTED: protein SHORT-ROOT-like
SwissprotQ9SZF70.0SHR_ARATH; Protein SHORT-ROOT
TrEMBLA0A0B2PV180.0A0A0B2PV18_GLYSO; Protein SHORT-ROOT
STRINGGLYMA11G05110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129734106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-180GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]