PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12987.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 130aa    MW: 14118.2 Da    PI: 6.2201
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12987.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.39.1e-322101195
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+
  KHN12987.1   2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVET 100
                 6**********************************************************************************************9998 PP

      DUF260  95 a 95 
                 +
  KHN12987.1 101 E 101
                 6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2211107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-272101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET ESGTTTACLE SGIGDHYAPD  120
GDRKVLNLFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150436e-67AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
GenBankKM0612216e-67KM061221.1 Phaseolus vulgaris cultivar Sprite Bng074 marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361406.12e-69LOB domain-containing protein 38-like
SwissprotQ9SZE83e-62LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0B2PZJ72e-92A0A0B2PZJ7_GLYSO; LOB domain-containing protein 39
STRINGGLYMA01G40010.13e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-64LOB domain-containing protein 39
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]