PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12911.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 673aa    MW: 73815.9 Da    PI: 6.4737
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12911.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.6e-27207260155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++F+ +v+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  KHN12911.1 207 KPRVVWSVELHQQFMAVVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260
                 79*******************.********************************8 PP

2Response_reg75.51.9e-25311391109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+   y ev+ ++ +e al ll+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a + ++ + + +  Ga 
    KHN12911.1  31 VLVVDDDPTCLMILERMLRACLY-EVTKCKRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKQVVMKGVTHGAC 125
                   89*****************9999.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
    KHN12911.1 126 DYLIKPVRIEALKN 139
                   **********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1744665IPR017053Response regulator B-type, plant
SuperFamilySSF521727.12E-3528148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-4028172No hitNo description
SMARTSM004489.1E-3029141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.3930145IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2231139IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.87E-2732144No hitNo description
SuperFamilySSF466891.43E-19204264IPR009057Homeodomain-like
PROSITE profilePS5129410.463204263IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-29206265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23207260IPR006447Myb domain, plants
PfamPF002496.1E-7209259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MNLSHGKGST SSSPLKAGDT VSDQFPAGLR VLVVDDDPTC LMILERMLRA CLYEVTKCKR  60
AEVALSLLRE NKNGFDIVLS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DGKQVVMKGV  120
THGACDYLIK PVRIEALKNI WQHVVRMRKN GLRDVEQSGS MEEGDRPPKG SDDGNYSSSV  180
NEAKSSKKRR DEDEEGDERD DSSTLKKPRV VWSVELHQQF MAVVNQLGID KAVPKKILEL  240
MNVPGLTREN VASHLQKYRL YLRRLSGVSQ QQGNLNNSFM SSQEATFGGT SINGIDLQTL  300
SAAGQFPSQS LAKLQATGLG RTTAKAGVPM PLSDQKNLFS FENPRLRFGE GSLQHLSNSK  360
PINLLHGIPT NMEPKQLANL HQSTQPLGSL NMRVNSPATQ NNPLLMQMTQ SQPRGQLLSE  420
NASSHVTRYP SSLVQPTVPN GISSGVLGNA IAGTSNITTT YNPVQQNSSL LSFPMNQTNE  480
MSASNFHLRS TPGITSIPNK GMFHEEGTSG VKGSGGFVQG YDMFNDLHHQ KSHDWDLTNT  540
GMTYDASQHA NPLQGNIDVS PSVLVHQSFP SMQQTVQNRD TTSIGKAMFS TGEGMHQSSL  600
QNIGQHHNNL LLDNSVRVKA ERIPDPSCQI NNLFSDQYGQ EDLVSAFLKQ QEGVGTAENE  660
FDFDGYSLDN IPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-22206266464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180969.10.0two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0B2PUA20.0A0A0B2PUA2_GLYSO; Two-component response regulator
STRINGGLYMA09G04470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39583458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]