PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12467.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 326aa    MW: 37603.6 Da    PI: 8.5191
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12467.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.8e-161251443
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +++   + tf kR++g+lKKA+E S+LC+++v vii++++
  KHN12467.1 12 KEEKACEKTFHKRKKGLLKKAYEFSTLCAVDVGVIIYAPK 51
                55556667*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-14161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.619151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-18297IPR002100Transcription factor, MADS-box
CDDcd002661.46E-17276No hitNo description
PRINTSPR004045.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRGRIPMEL IKEEKACEKT FHKRKKGLLK KAYEFSTLCA VDVGVIIYAP KYLNEPETWP  60
QDQDSREVKR VIQKYHNTTS DRHPKVYDVQ EYFNDRMKKI ESEISKVHKE EIKLMYPTWN  120
ESYNTLGEKQ LRMFVGILDA KLDACNQRMN MLKQDSKGKG IAKSDKIETL TPYMASNLGS  180
HLNFMSQTQL FTPSDNNQVA FYPFQLSQSS QPSTFHGGQS CVQLMEKNAM VDWANQVGVG  240
ANCDPKMGVL KEDQSNKTQN SSPCYYNGNM QTTQSYMQTL HSLLQYDATF QILSNQLGQP  300
PGFEHNSFYD SNMFQSQFFN YMHGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243807.10.0MADS-box protein EJ2-like
TrEMBLA0A445JCM80.0A0A445JCM8_GLYSO; Agamous-like MADS-box protein AGL82
STRINGGLYMA08G10080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-22M-type_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]