PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 896aa    MW: 98771.1 Da    PI: 6.5789
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12007.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.2e-24129230199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  KHN12007.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 223
                 99*****************************8544444..48************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  KHN12007.1 224 LLGIRRA 230
                 ****997 PP

2Auxin_resp121.75.6e-40255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  KHN12007.1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                 79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.16E-49114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-42123244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21128229No hitNo description
PROSITE profilePS5086312.548129231IPR003340B3 DNA binding domain
SMARTSM010191.8E-24129231IPR003340B3 DNA binding domain
PfamPF023625.2E-22129230IPR003340B3 DNA binding domain
PfamPF065077.9E-35255338IPR010525Auxin response factor
PfamPF023091.4E-8749844IPR033389AUX/IAA domain
SuperFamilySSF542771.11E-7753836No hitNo description
PROSITE profilePS5174523.264760846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MKLSSSGFNP PAEEEGEKKC LNSELWHACA GPLVSLPLVG SRVVYFPQGH SEQVAASTNR  60
EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT  120
PGKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLRRPWP SGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL  420
GVTPWMQPRL DASIPGLQPE LYQAMASSAF QEIRTMDPSK SSQSLLQFQQ TSNVPSAHAS  480
EVQRQVLPQS QPQNTLLHNY QENQVPAQSQ LLQQQLHRYH PYSDPRQQQQ QLKNLPVQQQ  540
LPNVISPLSN FASGTQSQSP PIQALASHCQ QQSFPELMRN HISGSDVSSI HSLLGSFSQD  600
GTSQLLNLSG SNSVMSSAAM LPKQITTEPP QLPSAAPQCV LPQVENLGTS QSNVSELAAL  660
PPFAGREHSA YHAAADPQSN LLFGINIDPS SLMLQNGMSN LRNIGNVNNS LSLPFSASNC  720
GGASGTDFPL SSNMTTSSCV DESGFLQSSE NVDQANTPTG TFVKVHKSGS FGRSLDISKF  780
SSYDELISEL ARMFGLEGQL EDPKTQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK  840
ILSPLEVQQM GKGLSPSTSA PGNKLSTPAN SCDNYVSQQE LRSSRNGMAS MGSFHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651335942388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199932.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A445H0U70.0A0A445H0U7_GLYSO; Auxin response factor
STRINGGLYMA14G03650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]