PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 308aa    MW: 35026 Da    PI: 6.2994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11870.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.26.1e-11257306147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + +W+  E+e l  +vk++G g+W++I +      ++R++ ++k++w++ 
       KHN11870.1 257 KRKWSSLEEETLRAGVKMFGEGNWASIRSFYSnvfENRSGVDLKDKWRNM 306
                      569*********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-14251308IPR009057Homeodomain-like
PROSITE profilePS5129417.691252308IPR017930Myb domain
SuperFamilySSF466892.81E-15253307IPR009057Homeodomain-like
SMARTSM007172.1E-6256308IPR001005SANT/Myb domain
PfamPF002495.5E-9257306IPR001005SANT/Myb domain
CDDcd116604.82E-18258308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKEVRVFLKE AWGAMGPSFL ETVAAKEKNK DEGARDNDDN DNICDDHDDG ACMEDVAMHG  60
ENQEPLEESV DANQEVGGFD LSPRRDEAIP KRNSQLKHKH SAFRASHRGR GVEISSPKEV  120
KATKSWSKHD PVPSAEVKKV RESLKSSSLE LRALVKDPLP HALHISDVVR SKLATSDTKT  180
EPLIENQHED VEVQDPDVCQ SIVPFQPNDV NLGKKSFVHC SNIHQPYLME QNISARTFEW  240
EDSVDNSPQA RQPRRRKRKW SSLEEETLRA GVKMFGEGNW ASIRSFYSNV FENRSGVDLK  300
DKWRNMIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191605.10.0uncharacterized protein LOC114377338
RefseqXP_028191606.10.0uncharacterized protein LOC114377338
TrEMBLA0A0B2PS530.0A0A0B2PS53_GLYSO; Telomeric repeat-binding factor 1
TrEMBLA0A445I4D00.0A0A445I4D0_GLYSO; Uncharacterized protein
STRINGGLYMA11G30814.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.12e-09telomere repeat binding factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]