PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11419.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 224aa    MW: 24738.5 Da    PI: 9.0322
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11419.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.42e-2741081100
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C++lr++C+++C+++p++     p++q++++ +++k++G++ +l+l++a+p++  + +++sl+yeA+ r+ +P yG++g+++++++  +++++++
  KHN11419.1   4 SCNGCRILRKGCNANCIIRPCLewmnsPESQANATLFLAKFYGRTGLLNLITAAPQHLGPVVFRSLLYEACGRLVNPTYGSLGLFWTGEWAQCEAAVDA 102
                 6************************************************************************************************99 PP

      DUF260  95 allkee 100
                 +l++++
  KHN11419.1 103 VLTGSK 108
                 998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5293109IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-224103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKSSCNGCRI LRKGCNANCI IRPCLEWMNS PESQANATLF LAKFYGRTGL LNLITAAPQH  60
LGPVVFRSLL YEACGRLVNP TYGSLGLFWT GEWAQCEAAV DAVLTGSKIN GVAPSDGHTS  120
GTLASDHILS TCDIRHMKNG TNVDDMRGRI QFKNVKQVIK PKPRMGSIDS TMLWKPNCQS  180
QSMETIEASL VSQDELNRVR KIKLDLELTL GFRCQSTNGK KTHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219642.11e-169LOB domain-containing protein 40-like
SwissprotQ9CA303e-57LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A445F3W21e-168A0A445F3W2_GLYSO; LOB domain-containing protein 42
STRINGGLYMA20G24950.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-59LOB domain-containing protein 42
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]